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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_103895467_103895683_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
103895467 - 103895683
Intron Length:
217

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTATA
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATAAT
U12 Branch Point Sequence:
TAGCATATAATT
Flanking Amino Acid:
DQWAWETLRDTVAPVVPDLS
Intron Amino Acid Position:
351

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
81.2
32.7
Major BPS
79
0.72
1
78.4
31.2
Major PPT
94
0.99
0.5
88.9
28.2
Minor 5ss
41.5
-0.9
2.8
57
41.2
Minor BPS
47.7
-0
1.7
64.65
39.7

Associated Gene:

Gene:
ROCK1
Ensembl Gene ID:
ENSAPLG00000002696
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021317
103854320 - 103938349
84030
ENSAPLT00000002836
103854320 - 103938349
84030