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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_103895844_103897278_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
103895844 - 103897278
Intron Length:
1435

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTATGTACA
5'SS Class:
major
3'SS Sequence:
AATGTTGTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
AAATCTTAAAAT
Flanking Amino Acid:
FVGFTYYSNRRYLSVSAENS
Intron Amino Acid Position:
404

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
73.7
36.7
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
73
0.52
1
65.3
44.8
Minor 5ss
42.6
-0.8
2.5
52.7
44
Minor BPS
54.6
0.22
1.7
69.84
40.7

Associated Gene:

Gene:
ROCK1
Ensembl Gene ID:
ENSAPLG00000002696
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021317
103854320 - 103938349
84030
ENSAPLT00000002836
103854320 - 103938349
84030