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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_103897346_103901332_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
103897346 - 103901332
Intron Length:
3987

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTATGTCTC
5'SS Class:
major
3'SS Sequence:
TATATATTTAAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
ATATATTTAAAG
Flanking Amino Acid:
RPGSNVDKSVLENMQKMIYE
Intron Amino Acid Position:
427

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
70.6
39.7
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
68.9
0.42
1.1
68.1
41.3
Minor 5ss
45
-0.5
2.8
58.6
40.4
Minor BPS
56.2
0.06
1.7
61.24
40.1

Associated Gene:

Gene:
ROCK1
Ensembl Gene ID:
ENSAPLG00000002696
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021317
103854320 - 103938349
84030
ENSAPLT00000002836
103854320 - 103938349
84030