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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_103904543_103906345_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
103904543 - 103906345
Intron Length:
1803

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAATTTT
5'SS Class:
strong_major
3'SS Sequence:
CATTTTTTGACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
CATTTTTTGACA
Flanking Amino Acid:
HGSEMIGELQVRITTLQEEV
Intron Amino Acid Position:
631

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
81.2
33.8
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
79
0.65
1
75.8
37.8
Minor 5ss
45
-0.5
3
58.4
46.2
Minor BPS
67.1
0.53
1.2
70.06
36.4

Associated Gene:

Gene:
ROCK1
Ensembl Gene ID:
ENSAPLG00000002696
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021317
103854320 - 103938349
84030
ENSAPLT00000002836
103854320 - 103938349
84030