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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_103909732_103910226_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
103909732 - 103910226
Intron Length:
495

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TATTCTTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TATTCTTTCACA
Flanking Amino Acid:
LLEVELAQLAKQYRGNEGQM
Intron Amino Acid Position:
832

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
86
23.6
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
84.8
0.78
0.8
79.9
31.7
Minor 5ss
36.8
-1.5
2.7
42.6
38.4
Minor BPS
70.6
0.64
1.7
80.29
35.7

Associated Gene:

Gene:
ROCK1
Ensembl Gene ID:
ENSAPLG00000002696
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021317
103854320 - 103938349
84030
ENSAPLT00000002836
103854320 - 103938349
84030