Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_103910297_103911737_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

103910297 - 103911737

Intron Length:

1441

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCG|GTAAGGATC

5'SS Class:

strong_major

3'SS Sequence:

CTTTCTTTTGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TAATGAT

U12 Branch Point Sequence:

TGAATAATGATT

Flanking Amino Acid:

DQLEAEQYFSTLYKTQVKEL

Intron Amino Acid Position:

856

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.78

77.3

37.9

Major BPS

76.8

0.67

40.9

Major PPT

92.1

0.95

0.6

87.8

22.1

Minor 5ss

37.3

-1.4

3.3

52.9

44.1

Minor BPS

43.2

-0.4

1.8

59.17

37.5

Associated Gene:

Gene:

ROCK1

Ensembl Gene ID:

ENSAPLG00000002696

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000021317

103854320 - 103938349

84030

ENSAPLT00000002836

103854320 - 103938349

84030