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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_103913902_103918032_F

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
103913902 - 103918032
Intron Length:
4131

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTCAT
5'SS Class:
strong_major
3'SS Sequence:
ATTATTTTAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
ATTATTTTAACA
Flanking Amino Acid:
ISEKIRKQEEEYKIKKEEEI
Intron Amino Acid Position:
974

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.89
0.9
79.7
35.4
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
78.2
0.63
1
73.9
39.8
Minor 5ss
42
-0.9
2.9
58.1
46.5
Minor BPS
73.1
0.72
1.2
77.98
32

Associated Gene:

Gene:
ROCK1
Ensembl Gene ID:
ENSAPLG00000002696
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021317
103854320 - 103938349
84030
ENSAPLT00000002836
103854320 - 103938349
84030