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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_103933764_103936564_F

Intron Information:

Intron Rank:
32
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
103933764 - 103936564
Intron Length:
2801

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
CTGCATATTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TTTACGGCAAAC
Flanking Amino Acid:
KAVKNTSGKTRHRVWRKKHV
Intron Amino Acid Position:
1358

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.8
85.9
23.9
Major BPS
83
0.82
0.8
82
24.9
Major PPT
68.7
0.42
0.9
62.6
38.1
Minor 5ss
29.7
-2.3
3
39.4
46.1
Minor BPS
40.2
-0.7
2.7
60.73
44.1

Associated Gene:

Gene:
ROCK1
Ensembl Gene ID:
ENSAPLG00000002696
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021317
103854320 - 103938349
84030