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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_103936643_103938345_F

Intron Information:

Intron Rank:
33
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
103936643 - 103938345
Intron Length:
1703

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGTGCG
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTGTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
GTAGTATTAATT
Flanking Amino Acid:
EAQLLTSESAS*
Intron Amino Acid Position:
1384

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
71.5
38.6
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
87.3
0.84
0.8
80.2
37.3
Minor 5ss
39.1
-1.2
3
49.9
46.5
Minor BPS
54.6
0.22
1.7
70.31
40.7

Associated Gene:

Gene:
ROCK1
Ensembl Gene ID:
ENSAPLG00000002696
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021317
103854320 - 103938349
84030