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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_103946781_103947376_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
103946781 - 103947376
Intron Length:
596

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGAAATC
5'SS Class:
major
3'SS Sequence:
TTTTCAAATACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTCTCTTTTATT
Flanking Amino Acid:
KVMVKGGTLKDDDWGNLKIK
Intron Amino Acid Position:
58

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.2
0.57
1
72.3
37.6
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
77.2
0.61
0.9
71.2
37.7
Minor 5ss
36
-1.6
3.4
51.4
45.5
Minor BPS
68.7
0.67
1.6
83.34
38.2

Associated Gene:

Gene:
USP14
Ensembl Gene ID:
ENSAPLG00000000901
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001141
103946466 - 103962265
15800