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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_103961982_103962113_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
103961982 - 103962113
Intron Length:
132

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAATA
5'SS Class:
strong_major
3'SS Sequence:
GTTTTTCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
TGTGCCTAAATT
Flanking Amino Acid:
HYVSWVKRKQDEWIKFDDDK
Intron Amino Acid Position:
446

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
83.2
28.3
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
89.9
0.9
0.7
84.9
29.9
Minor 5ss
36.4
-1.5
3.1
48.8
46.9
Minor BPS
64.2
0.52
1.8
80.32
42.1

Associated Gene:

Gene:
USP14
Ensembl Gene ID:
ENSAPLG00000000901
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038849
103946466 - 103962265
15800
ENSAPLT00000001141
103946466 - 103962265
15800