Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_103965884_103967312_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

103965884 - 103967312

Intron Length:

1429

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCT|GTAAGTGGT

5'SS Class:

major

3'SS Sequence:

TCTCTCATTATAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AATTCAT

U12 Branch Point Sequence:

TGATATTTAGTT

Flanking Amino Acid:

MVIKLAKELPPPSEEIKTGE

Intron Amino Acid Position:

533

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.5

0.58

1.1

69.5

41.3

Major BPS

83.4

0.83

0.8

83.7

25.7

Major PPT

78.8

0.65

0.8

73.4

30.1

Minor 5ss

37.3

-1.4

3.4

59.1

45.4

Minor BPS

53.1

0.17

1.7

70.66

40.4

Associated Gene:

Gene:

THOC1

Ensembl Gene ID:

ENSAPLG00000016149

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030182

103963907 - 103981789

17883

ENSAPLT00000016883

103963907 - 103981789

17883