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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_103969702_103970122_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
103969702 - 103970122
Intron Length:
421

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAGGTCTT
5'SS Class:
major
3'SS Sequence:
TTTTTTCCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TTGATATTAAAG
Flanking Amino Acid:
KERSQPEFQLGPPDSKPMRP
Intron Amino Acid Position:
409

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1.1
72.7
44.5
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
90.2
0.9
0.6
89.9
18.2
Minor 5ss
38.3
-1.3
3.4
50
46.3
Minor BPS
49.6
-0.1
1.8
58.39
42.8

Associated Gene:

Gene:
THOC1
Ensembl Gene ID:
ENSAPLG00000016149
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030182
103963907 - 103981789
17883