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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_103971085_103971710_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
103971085 - 103971710
Intron Length:
626

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAACT
5'SS Class:
strong_major
3'SS Sequence:
TATGTTTCTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
TCTCTGATAATA
Flanking Amino Acid:
DGERFSKMVEHILNTEENWN
Intron Amino Acid Position:
378

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.1
1.02
0.7
87.2
27
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
82.3
0.73
0.9
73.9
41.3
Minor 5ss
36.1
-1.6
3
50.2
45.8
Minor BPS
45.7
-0.3
2.2
60.86
39.7

Associated Gene:

Gene:
THOC1
Ensembl Gene ID:
ENSAPLG00000016149
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016883
103963907 - 103981789
17883
ENSAPLT00000030182
103963907 - 103981789
17883