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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_103972000_103973528_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
103972000 - 103973528
Intron Length:
1529

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATATGG
5'SS Class:
major
3'SS Sequence:
TTTTCAATTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TCTTTTTCAATT
Flanking Amino Acid:
QYLKGQVKFKSSNYVLTDEQ
Intron Amino Acid Position:
338

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
65.3
41.4
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
83.7
0.76
0.8
75.1
38.7
Minor 5ss
37.4
-1.4
3
48.1
47.4
Minor BPS
65.2
0.55
1.5
79.05
38

Associated Gene:

Gene:
THOC1
Ensembl Gene ID:
ENSAPLG00000016149
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016883
103963907 - 103981789
17883
ENSAPLT00000030182
103963907 - 103981789
17883