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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_103973630_103974999_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
103973630 - 103974999
Intron Length:
1370

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGTGAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTGTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAA
U12 Branch Point Sequence:
CTATGTGTAATT
Flanking Amino Acid:
YFAKFLTSEKLMDLQLSDSN
Intron Amino Acid Position:
305

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
81.6
32.3
Major BPS
78
0.7
0.9
79.6
29.1
Major PPT
85.9
0.81
0.8
81.2
36.5
Minor 5ss
33.3
-1.9
3.5
48.8
47.4
Minor BPS
46.8
-0.1
2.3
67.65
44.2

Associated Gene:

Gene:
THOC1
Ensembl Gene ID:
ENSAPLG00000016149
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030182
103963907 - 103981789
17883
ENSAPLT00000016883
103963907 - 103981789
17883