Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_103975132_103976346_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

103975132 - 103976346

Intron Length:

1215

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAATCTCA

5'SS Class:

major

3'SS Sequence:

TCTTGTTTTATAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCTTCAT

U12 Branch Point Sequence:

TTTTTCTTCATG

Flanking Amino Acid:

EKVSWKTFLKYSEEVLAVFK

Intron Amino Acid Position:

261

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.3

0.69

70.5

36.3

Major BPS

87.4

0.93

0.9

87.9

29.5

Major PPT

84.5

0.78

0.7

79.8

32.3

Minor 5ss

44.2

-0.6

2.8

57.5

46.7

Minor BPS

66.2

0.36

1.8

74.4

38.6

Associated Gene:

Gene:

THOC1

Ensembl Gene ID:

ENSAPLG00000016149

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030182

103963907 - 103981789

17883

ENSAPLT00000016883

103963907 - 103981789

17883