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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_103976456_103977041_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
103976456 - 103977041
Intron Length:
586

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGCTTA
5'SS Class:
major
3'SS Sequence:
TATTTTTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
GTTTTCTTAACC
Flanking Amino Acid:
EMGDDEAPTSCSIPIDYNLY
Intron Amino Acid Position:
224

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
0.9
72.8
34.4
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
91.8
0.94
0.7
84.8
35.4
Minor 5ss
42.1
-0.9
3
52.2
46
Minor BPS
85.2
1.08
1
86.92
29.7

Associated Gene:

Gene:
THOC1
Ensembl Gene ID:
ENSAPLG00000016149
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016883
103963907 - 103981789
17883
ENSAPLT00000030182
103963907 - 103981789
17883