About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_103977116_103977636_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
103977116 - 103977636
Intron Length:
521

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCTATTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TCTTTATTATTT
Flanking Amino Acid:
NEHESTLGQKHSEERDEGME
Intron Amino Acid Position:
200

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95
1.06
0.7
93.7
19.9
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
82.3
0.73
0.8
83.2
27
Minor 5ss
39.4
-1.2
3.1
57.6
46.6
Minor BPS
56.2
0.27
1.8
76.22
41

Associated Gene:

Gene:
THOC1
Ensembl Gene ID:
ENSAPLG00000016149
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016883
103963907 - 103981789
17883
ENSAPLT00000030182
103963907 - 103981789
17883