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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_103978104_103978596_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
103978104 - 103978596
Intron Length:
493

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TTGCAATATTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
AATTCTGTACTT
Flanking Amino Acid:
GKNYLLRMCNDLLRRLSKSQ
Intron Amino Acid Position:
140

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
0.8
79.3
29.7
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
66.3
0.37
1
63.6
41.9
Minor 5ss
37.5
-1.4
2.9
47.5
42.3
Minor BPS
48.5
-0
2.2
70.85
40.9

Associated Gene:

Gene:
THOC1
Ensembl Gene ID:
ENSAPLG00000016149
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030182
103963907 - 103981789
17883
ENSAPLT00000016883
103963907 - 103981789
17883