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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_103979461_103980323_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
103979461 - 103980323
Intron Length:
863

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCATC
5'SS Class:
strong_major
3'SS Sequence:
CTGTTCCTCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCAAAT
U12 Branch Point Sequence:
ATTTGCTGAACA
Flanking Amino Acid:
ISLAINGVTEGICTASTPFV
Intron Amino Acid Position:
84

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.4
0.88
0.8
81.3
32.8
Major BPS
77.3
0.68
1
81.5
27
Major PPT
74.1
0.54
0.8
68.9
31.7
Minor 5ss
38.5
-1.3
3
51.2
45.7
Minor BPS
65.3
0.48
1.9
78.95
37.1

Associated Gene:

Gene:
THOC1
Ensembl Gene ID:
ENSAPLG00000016149
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030182
103963907 - 103981789
17883
ENSAPLT00000016883
103963907 - 103981789
17883