Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_104002588_104004283_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

104002588 - 104004283

Intron Length:

1696

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAC|GTACGTAAA

5'SS Class:

major

3'SS Sequence:

TTTTTGTTGAAAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CAATAAT

U12 Branch Point Sequence:

TTTTTGTTGAAA

Flanking Amino Acid:

RWVDGSLPDYTNWKNGQPDN

Intron Amino Acid Position:

690

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.4

0.5

1.3

74.3

Major BPS

67.7

0.44

1.1

67.9

34.4

Major PPT

71.1

0.48

1.2

74.5

39.3

Minor 5ss

35.4

-1.7

2.9

40.7

Minor BPS

54.8

0.15

2.2

74.81

36.6

Associated Gene:

Gene:

COLEC12

Ensembl Gene ID:

ENSAPLG00000015987

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016693

104001228 - 104095986

94759