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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_104004394_104005184_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
104004394 - 104005184
Intron Length:
791

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTAGG
5'SS Class:
strong_major
3'SS Sequence:
CTTCCTTCCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
ATGTTATGGACT
Flanking Amino Acid:
LVIINNKEEQQWIKRQIAGK
Intron Amino Acid Position:
654

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
1.1
72.7
44.5
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
80.9
0.7
0.7
75.7
26.5
Minor 5ss
40.7
-1
2.6
51.6
44.9
Minor BPS
49.7
0.06
1.8
70.83
40

Associated Gene:

Gene:
COLEC12
Ensembl Gene ID:
ENSAPLG00000015987
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016693
104001228 - 104095986
94759