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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_104011366_104017190_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
104011366 - 104017190
Intron Length:
5825

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTATG
5'SS Class:
strong_major
3'SS Sequence:
CTCTTTTCCCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTAACAT
U12 Branch Point Sequence:
CTTTCCTTAACA
Flanking Amino Acid:
TITVAILGYKVVEKMDNVTG
Intron Amino Acid Position:
63

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.4
0.93
0.8
83.5
35.1
Major BPS
71
0.52
1.1
77.7
35.3
Major PPT
78.8
0.65
0.7
72.8
32
Minor 5ss
45.4
-0.5
2.5
59.2
45.4
Minor BPS
90.4
1.26
0.9
91.36
30.2

Associated Gene:

Gene:
COLEC12
Ensembl Gene ID:
ENSAPLG00000015987
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016693
104001228 - 104095986
94759