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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_104017314_104085722_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
104017314 - 104085722
Intron Length:
68409

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
AATTCTTTAAAT
Flanking Amino Acid:
EVQSFGYKRFGIQEGTQCTK
Intron Amino Acid Position:
22

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.89
0.9
77.6
30.7
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
92
0.94
0.6
87.8
22.1
Minor 5ss
33.1
-1.9
3.2
40.3
40.2
Minor BPS
75.8
0.89
1.3
85.16
34.3

Associated Gene:

Gene:
COLEC12
Ensembl Gene ID:
ENSAPLG00000015987
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016693
104001228 - 104095986
94759