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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_104085774_104095804_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
104085774 - 104095804
Intron Length:
10031

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGGAAA
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGTAAC
U12 Branch Point Sequence:
GTAGTAGTAACC
Flanking Amino Acid:
MKGKDDFAEEEEVQ
Intron Amino Acid Position:
5

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
74.9
37
Major BPS
66.7
0.42
1.2
67.6
36.5
Major PPT
91.3
0.93
0.6
84.1
30.8
Minor 5ss
30.2
-2.3
3.3
38.5
46.8
Minor BPS
44.1
-0.4
2.2
56.59
41.7

Associated Gene:

Gene:
COLEC12
Ensembl Gene ID:
ENSAPLG00000015987
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016693
104001228 - 104095986
94759