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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_104144044_104144960_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
104144044 - 104144960
Intron Length:
917

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAATATG
5'SS Class:
strong_major
3'SS Sequence:
GCTTTTTTAACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAA
U12 Branch Point Sequence:
GCTTTTTTAACA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
76.9
38.1
Major BPS
79
0.72
1
80.3
31.7
Major PPT
80.5
0.69
0.9
76.7
36.2
Minor 5ss
38.8
-1.3
2.9
47.7
42.4
Minor BPS
74.2
0.75
1.1
75.16
36.6

Associated Gene:

Gene:
CLUL1
Ensembl Gene ID:
ENSAPLG00000015948
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016637
104143784 - 104157918
14135