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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_104145071_104146413_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
104145071 - 104146413
Intron Length:
1343

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTATGTATG
5'SS Class:
major
3'SS Sequence:
GTATTTATTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTATTTATGT
Flanking Amino Acid:
EETNLRESLKMLSEVGEKYV
Intron Amino Acid Position:
35

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.6
0.46
1.1
68.1
42.8
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
76.8
0.6
0.9
74.9
39.6
Minor 5ss
46.7
-0.3
2.5
56.1
42.4
Minor BPS
55.1
0.24
2
80.49
41.6

Associated Gene:

Gene:
CLUL1
Ensembl Gene ID:
ENSAPLG00000015948
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016637
104143784 - 104157918
14135