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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_104146563_104149067_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
104146563 - 104149067
Intron Length:
2505

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAAGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTACTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
TTGCCATTAACT
Flanking Amino Acid:
TLKKSSEEKQEALRIMDEVK
Intron Amino Acid Position:
85

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
77.9
36.7
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
85.1
0.79
0.8
85.2
28.4
Minor 5ss
34.5
-1.8
3.1
49.5
46.3
Minor BPS
72.3
0.78
1.6
87.1
38

Associated Gene:

Gene:
CLUL1
Ensembl Gene ID:
ENSAPLG00000015948
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016637
104143784 - 104157918
14135