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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_104146_104232_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
104146 - 104232
Intron Length:
87

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTGAGTGAA
5'SS Class:
major
3'SS Sequence:
TCTCTCTCTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTGAT
U12 Branch Point Sequence:
CATGTCTGATGT
Flanking Amino Acid:
MHNRKLKYYTGNYDQYVKTR
Intron Amino Acid Position:
249

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1
67.8
32.7
Major BPS
73.6
0.59
1.2
65.3
43.7
Major PPT
80.9
0.69
0.7
73.7
31.4
Minor 5ss
28.7
-2.4
3.1
36.5
41.7
Minor BPS
42.6
-0.4
2
56.93
45.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009201
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009615
100810 - 108472
7663