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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_104155965_104157756_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
104155965 - 104157756
Intron Length:
1792

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTCTCCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATTTATTT
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.8
79.4
29.6
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
80.9
0.69
0.8
74.3
35.9
Minor 5ss
40.6
-1
2.7
47.5
42.3
Minor BPS
59.9
0.39
1.7
79.07
37.4

Associated Gene:

Gene:
CLUL1
Ensembl Gene ID:
ENSAPLG00000015948
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016637
104143784 - 104157918
14135