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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_104159793_104160472_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
104159793 - 104160472
Intron Length:
680

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTCGGCACC
5'SS Class:
major
3'SS Sequence:
ATTATATTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TGTTTATTATAT
Flanking Amino Acid:
FGMQARYSLRDQFPLLTTKR
Intron Amino Acid Position:
60

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65
0.35
1.4
62.7
40.3
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
81.8
0.72
0.9
78.4
39.4
Minor 5ss
34.7
-1.7
3
44.2
43.3
Minor BPS
51.3
0.12
1.9
75.11
41.1

Associated Gene:

Gene:
TYMS
Ensembl Gene ID:
ENSAPLG00000015661
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016346
104159615 - 104168567
8953