About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_104160547_104161761_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
104160547 - 104161761
Intron Length:
1215

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTCAGTAT
5'SS Class:
major
3'SS Sequence:
CTGTATTTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGTAC
U12 Branch Point Sequence:
CTGTCTGTATTT
Flanking Amino Acid:
VLEELLWFIKGSTNAKELSA
Intron Amino Acid Position:
85

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
60.3
0.24
1.2
61.2
39.8
Major BPS
61.6
0.29
1.4
63.4
44
Major PPT
78
0.63
0.9
73.2
36.9
Minor 5ss
33
-1.9
3.5
47.2
48.2
Minor BPS
47
-0.1
2.2
66.59
45.3

Associated Gene:

Gene:
TYMS
Ensembl Gene ID:
ENSAPLG00000015661
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016346
104159615 - 104168567
8953