About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_104161937_104163851_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
104161937 - 104163851
Intron Length:
1915

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATCAGA
5'SS Class:
major
3'SS Sequence:
TATCTTTCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGAAT
U12 Branch Point Sequence:
TCTATCTGACTT
Flanking Amino Acid:
FGAEYKDMHTDYSNQGVDQL
Intron Amino Acid Position:
143

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
70.8
41.1
Major BPS
74.6
0.61
1.4
84
34.5
Major PPT
87
0.83
0.7
85.2
29.2
Minor 5ss
38.8
-1.3
2.8
49.6
46.2
Minor BPS
49.4
0.04
1.8
68.71
42.7

Associated Gene:

Gene:
TYMS
Ensembl Gene ID:
ENSAPLG00000015661
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016346
104159615 - 104168567
8953