About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_104163954_104165119_F


Intron Information:

Intron Rank:
4

Intron Class:
major

Intron Phase:
1

Intron Coordinates:
104163954 - 104165119

Intron Length:
1166

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
AAG|GTACTGAAC

5'SS Class:
major

3'SS Sequence:
TTGCAATTCCTAG|A

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TTTTGAC

U12 Branch Point Sequence:
TCTTCCTGTATT

Flanking Amino Acid:
RIIMCAWNPKDISLMALPPC

Intron Amino Acid Position:
177

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
71.1
0.5
1.1
66.1
39.5

Major BPS
86.5
0.91
0.8
77.4
37.4

Major PPT
67.2
0.39
0.9
58.8
41.8

Minor 5ss
31.6
-2.1
3.3
42.7
44.4

Minor BPS
62.5
0.47
1.8
80.68
41.2

Associated Gene:

Gene:
TYMS

Ensembl Gene ID:

Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

104159615 - 104168567
8953