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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_104167352_104168289_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
104167352 - 104168289
Intron Length:
938

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
GCTTTTATTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TATGCTTTTATT
Flanking Amino Acid:
LNHVEPLKIQLQREPRPFPK
Intron Amino Acid Position:
260

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
87.3
26.9
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
84
0.76
0.8
81.4
34.9
Minor 5ss
40.1
-1.1
2.8
53.2
37.3
Minor BPS
59.4
0.38
1.7
76.34
41.1

Associated Gene:

Gene:
TYMS
Ensembl Gene ID:
ENSAPLG00000015661
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016346
104159615 - 104168567
8953