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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_104192476_104194309_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
104192476 - 104194309
Intron Length:
1834

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGTGTGGC
5'SS Class:
strong_major
3'SS Sequence:
TCATATTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTCACCAAACT
Flanking Amino Acid:
IYIVTEFMTKGSLLDFLKEG
Intron Amino Acid Position:
392

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
0.9
68.4
36.9
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
82
0.72
0.9
76
37.5
Minor 5ss
33.7
-1.9
3.1
43.4
44.3
Minor BPS
49.8
0.06
2.2
79.61
41.7

Associated Gene:

Gene:
YES1
Ensembl Gene ID:
ENSAPLG00000015182
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015864
104189011 - 104222871
33861