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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_104194490_104194765_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
104194490 - 104194765
Intron Length:
276

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGAGCT
5'SS Class:
strong_major
3'SS Sequence:
TTTGCTTCTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATAAT
U12 Branch Point Sequence:
TAACATATAATT
Flanking Amino Acid:
GQGCFGEVWMGTWNGTTKVA
Intron Amino Acid Position:
332

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
72.5
37.3
Major BPS
79
0.72
1
78.4
31.2
Major PPT
81.3
0.7
0.8
74.1
36.7
Minor 5ss
32.6
-2
3.4
40.6
45.1
Minor BPS
48.1
-0
1.7
65.88
38.2

Associated Gene:

Gene:
YES1
Ensembl Gene ID:
ENSAPLG00000015182
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015864
104189011 - 104222871
33861