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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_104194922_104195136_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
104194922 - 104195136
Intron Length:
215

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCCAA
5'SS Class:
strong_major
3'SS Sequence:
TTCCATTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
TAACCATTAAGC
Flanking Amino Acid:
SLQKLVKHYREHADGLCHKL
Intron Amino Acid Position:
280

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.4
0.9
0.9
74.1
38.3
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
84.4
0.77
0.8
76.4
37.3
Minor 5ss
37.2
-1.4
3
47
48.3
Minor BPS
51.8
0.04
1.9
63.72
40.9

Associated Gene:

Gene:
YES1
Ensembl Gene ID:
ENSAPLG00000015182
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015864
104189011 - 104222871
33861