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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_104195569_104198430_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
104195569 - 104198430
Intron Length:
2862

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGACAC
5'SS Class:
major
3'SS Sequence:
TAACTTTTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTTCCTCTAACT
Flanking Amino Acid:
VAPADSIQAEEWYFGKMGRK
Intron Amino Acid Position:
195

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.8
0.47
1.1
59.7
39.7
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
77.3
0.61
0.9
69.9
40.9
Minor 5ss
33.5
-1.9
3.1
39.3
40
Minor BPS
71.5
0.75
1.6
90.42
32.8

Associated Gene:

Gene:
YES1
Ensembl Gene ID:
ENSAPLG00000015182
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015864
104189011 - 104222871
33861