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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_104198530_104199571_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
104198530 - 104199571
Intron Length:
1042

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTAAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
GATAACTGATCT
Flanking Amino Acid:
KGERFQIINNTEGDWWEARS
Intron Amino Acid Position:
162

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
1.2
85.2
32.2
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
89.7
0.89
0.6
84.8
22.9
Minor 5ss
40
-1.1
3.4
57.4
40.7
Minor BPS
46.8
-0.1
1.9
65.5
43.8

Associated Gene:

Gene:
YES1
Ensembl Gene ID:
ENSAPLG00000015182
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015864
104189011 - 104222871
33861