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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_104282246_104282561_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
104282246 - 104282561
Intron Length:
316

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGACCGCA
5'SS Class:
major
3'SS Sequence:
CCTCCGGCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGCTCAC
U12 Branch Point Sequence:
TCGCCGCTCACC
Flanking Amino Acid:
VYTLYYPPEKRHADGIFNKA
Intron Amino Acid Position:
79

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.9
0.49
1.2
62
38.8
Major BPS
57.5
0.19
1.1
60.7
37.6
Major PPT
63.2
0.3
0.9
53
36.7
Minor 5ss
36.7
-1.5
3.3
47.9
47.8
Minor BPS
40
-0.8
2.5
52.14
45.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028139
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036784
104280171 - 104284171
4001