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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_104312668_104312757_R

Intron Information:

Intron Rank:
129342
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
104312668 - 104312757
Intron Length:
90

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGACCC
5'SS Class:
strong_major
3'SS Sequence:
TGCAAATCGTTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AACTCAA
U12 Branch Point Sequence:
GCTTCCTTGATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.9
0.92
0.9
72.5
37.3
Major BPS
69.1
0.48
0.9
69.6
26.6
Major PPT
54.1
0.09
1
51.7
42.6
Minor 5ss
33.2
-1.9
3.1
43.3
43.8
Minor BPS
70.4
0.5
1.3
67.07
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016803
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033608
104312233 - 104313772
1540
ENSAPLT00000023964
104312233 - 104313772
1540
ENSAPLT00000020284
104312233 - 104314987
2755