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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_104312886_104313604_R

Intron Information:

Intron Rank:
129350
Intron Class:
major
Intron Phase:
Intron Coordinates:
104312886 - 104313604
Intron Length:
719

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTCTG
5'SS Class:
strong_major
3'SS Sequence:
TTATTTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTTTATTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
1.1
72.7
44.5
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
91.3
0.93
0.7
84.8
35.6
Minor 5ss
43.4
-0.7
2.9
58.6
45.9
Minor BPS
64.4
0.53
1.7
84.57
36.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016803
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033608
104312233 - 104313772
1540