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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_10442269_10452370_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10442269 - 10452370
Intron Length:
10102

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGCACC
5'SS Class:
major
3'SS Sequence:
TTTATTAATGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
CATTTTTTAATT
Flanking Amino Acid:
GNRPLFYFRFGVDQALPQER
Intron Amino Acid Position:
76

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
67.6
37.6
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
79.7
0.67
0.9
75
38.7
Minor 5ss
35.3
-1.7
2.8
41.4
39.1
Minor BPS
72.8
0.79
1.1
80
36.6

Associated Gene:

Gene:
DIP2C
Ensembl Gene ID:
ENSAPLG00000002490
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035133
10312877 - 10455174
142298