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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_10442269_10455116_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10442269 - 10455116
Intron Length:
12848

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TTTATTAATGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
CATTTTTTAATT
Flanking Amino Acid:
LIGAYLPQPPGVDQALPQER
Intron Amino Acid Position:
35

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
78.5
31.3
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
79.7
0.67
0.9
75
38.7
Minor 5ss
50.1
0.01
2.4
63.4
43.4
Minor BPS
72.8
0.79
1.1
80
36.6

Associated Gene:

Gene:
DIP2C
Ensembl Gene ID:
ENSAPLG00000002490
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002549
10312877 - 10457120
144244