Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_104424720_104424918_F

Intron Information:

Intron Rank:

138621

Intron Class:

major

Intron Phase:

Intron Coordinates:

104424720 - 104424918

Intron Length:

199

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCA|GTAAGGAAA

5'SS Class:

major

3'SS Sequence:

GGGTTTCTTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTTTAAA

U12 Branch Point Sequence:

TTCTCCCTAAAT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.1

0.52

1.1

37.4

Major BPS

0.7

0.9

79.6

29.1

Major PPT

76.3

0.59

69.6

41.6

Minor 5ss

33.8

-1.8

3.2

45.1

43.8

Minor BPS

68.1

0.65

1.8

86.25

39.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000024627

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000031873

104424255 - 104425577

1323