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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_104447781_104461000_F

Intron Information:

Intron Rank:
147170
Intron Class:
major
Intron Phase:
Intron Coordinates:
104447781 - 104461000
Intron Length:
13220

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGAGA
5'SS Class:
strong_major
3'SS Sequence:
CTCTGCCCACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TCATTCTCATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.9
74.8
37
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
67.5
0.39
0.9
59.2
37
Minor 5ss
26.2
-2.7
2.9
30.9
42.7
Minor BPS
54.3
0.21
1.8
72.57
44.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029281
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040524
104447393 - 104461609
14217