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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_104463894_104465496_F

Intron Information:

Intron Rank:
147167
Intron Class:
major
Intron Phase:
Intron Coordinates:
104463894 - 104465496
Intron Length:
1603

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGACAG
5'SS Class:
strong_major
3'SS Sequence:
TCCTTCCCAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TCTTTTTCACCA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
0.9
67.7
39.3
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
74.4
0.55
0.8
69.8
29.6
Minor 5ss
25.9
-2.8
2.9
29.3
43.4
Minor BPS
51.8
0.05
1.8
66.33
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029281
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021438
104463607 - 104475632
12026