About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_104525372_104526504_F

Intron Information:

Intron Rank:
138758
Intron Class:
major
Intron Phase:
Intron Coordinates:
104525372 - 104526504
Intron Length:
1133

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGCCTA
5'SS Class:
strong_major
3'SS Sequence:
TGTCCTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCCAAT
U12 Branch Point Sequence:
CTCCCAATACCC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
1
70.7
41.3
Major BPS
59.3
0.23
1.3
66.9
37.7
Major PPT
83
0.74
0.8
77
31.6
Minor 5ss
41.6
-0.9
3.1
53.4
44.8
Minor BPS
42.8
-0.5
2.1
53.95
43.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024753
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020804
104524980 - 104526998
2019